Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
نویسندگان
چکیده
منابع مشابه
Unipro UGENE: a unified bioinformatics toolkit
UNLABELLED Unipro UGENE is a multiplatform open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data. UGENE integrates widely used bioinformatics tools within a common user interface. The toolkit supports multiple biological data formats and allows the retrieval of data from remote data sources....
متن کاملRegularization as a Toolkit for Parsimonious Modeling in Bioinformatics
With the tremendous progress in bioinformatics we are facing new challenges where complex data set need to be analyzed to glean meaningful scientific knowledge. Though statistical tools were slow to emerge in the beginning, however it was discovered early that there exist some seemingly related issues in many of the different bioinformatics data sets. They are generally overly complex giving ri...
متن کاملBioGAT: a Grid Toolkit for Bioinformatics Sequence Alignment
Even though there are many useful tools for sequence alignment such as Blast by NCBI, Fasta by the University of Virginia and Smith-Waterman, by NIST, one of the key issues is that sequence databases are exploding in size, growing at an exponential rate. Grid and parallel computing are crucial techniques to maintain and improve the effectiveness of sequence comparison tools, whereas the Web Ser...
متن کاملThe bioinformatics resource for oral pathogens
Complete genomic sequences of several oral pathogens have been deciphered and multiple sources of independently annotated data are available for the same genomes. Different gene identification schemes and functional annotation methods used in these databases present a challenge for cross-referencing and the efficient use of the data. The Bioinformatics Resource for Oral Pathogens (BROP) aims to...
متن کاملPhylogenetic reassessment of Nigrospora: Ubiquitous endophytes, plant and human pathogens
Species of Nigrospora commonly occur as plant pathogens, endophytes or saprobes, and have been shown to be extremely interesting for the discovery of novel metabolites. The familial placement, as well as phylogenetic relationships among Nigrospora species remain ambiguous. In this study, Nigrospora (= Khusia) is confirmed as a monophyletic genus belonging to Apiosporaceae (Xylariales), based on...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Journal of Open Source Software
سال: 2021
ISSN: 2475-9066
DOI: 10.21105/joss.02906